PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007212.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 313aa    MW: 32152.9 Da    PI: 9.6262
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007212.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.19.7e-06211251954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+r+ +++  L++l+P        +++ a++L +A  Y+k L
  Do007212.1 211 ARLRRERVSERLRVLQRLVPGG-----SRMDTASMLDEAASYLKFL 251
                 599*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.215202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.39E-10208256No hitNo description
SMARTSM003536.8E-11208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-12208260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-8211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGLDTADVLP SVGGAVEDSL LDPFVYVPNV VAVAEEPAQT TAPSNTDFSG YSSTTGGGNG  60
NISSGESITC GGGGGGYDTE VASPCAVSRP ALLQTTTGVP PSKRKPGKYP AIAAPGRKAA  120
AGRRGEKRTA ATSPSSTSIT FAGQGHDDHA AGGGYEPDSE AIAQVKEMIY RAAAMRPVHQ  180
LVCGAAEPPS SQAKPRRKNV RISSDPQTVA ARLRRERVSE RLRVLQRLVP GGSRMDTASM  240
LDEAASYLKF LKSQLKALER ASPSNGSYHN GSLLQSYTGS LGGGGAAGAS TVLAFGRDSA  300
IGGYVKSNRN VQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198KPRRKN
2211216RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0658891e-122BT065889.1 Zea mays full-length cDNA clone ZM_BFc0179C07 mRNA, complete cds.
GenBankBT0663021e-122BT066302.1 Zea mays full-length cDNA clone ZM_BFc0192A04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961359.11e-157PREDICTED: transcription factor bHLH122-like
TrEMBLK3Z6V51e-157K3Z6V5_SETIT; Uncharacterized protein
STRINGSi022274m1e-157(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-28bHLH family protein